package Basic.VolumeRendering;
import org.web3d.x3d.jsail.Core.*;
import org.web3d.x3d.jsail.EnvironmentalEffects.*;
import org.web3d.x3d.jsail.fields.*;
import org.web3d.x3d.jsail.Grouping.*;
import org.web3d.x3d.jsail.Navigation.*;
import org.web3d.x3d.jsail.Texturing3D.*;
import org.web3d.x3d.jsail.VolumeRendering.*;
// Javadoc metadata annotations follow, see below for X3DJSAIL Java source code.
/**
* Volume rendering of a CT scan of a skull, rendered as an isosurface with cartoon render style.
Related links: Catalog page IsoSurfaceSkull, source IsoSurfaceSkull.java, X3D Resources, X3D Scene Authoring Hints, and X3D Tooltips.
This program uses the
X3D Java Scene Access Interface Library (X3DJSAIL).
It has been produced using the
X3dToJava.xslt
stylesheet
(version control)
which is used to create Java source code from an original .x3d model.
* @author Andrew Wood, Nicholas Polys: Virginia Tech
*/
public class IsoSurfaceSkull
{
/** Default constructor to create this object. */
public IsoSurfaceSkull ()
{
initialize();
}
/** Create and initialize the X3D model for this object. */
public final void initialize()
{
try { // catch-all
x3dModel = new X3D().setProfile(X3D.PROFILE_IMMERSIVE).setVersion(X3D.VERSION_3_3)
.setHead(new head()
.addComponent(new component().setName("VolumeRendering").setLevel(2))
.addComponent(new component().setName("Texturing3D").setLevel(2))
.addMeta(new meta().setName(meta.NAME_TITLE ).setContent("IsoSurfaceSkull.x3d"))
.addMeta(new meta().setName(meta.NAME_DESCRIPTION).setContent("Volume rendering of a CT scan of a skull, rendered as an isosurface with cartoon render style"))
.addMeta(new meta().setName(meta.NAME_CREATED ).setContent("24 March 2011"))
.addMeta(new meta().setName(meta.NAME_MODIFIED ).setContent("29 March 2020"))
.addMeta(new meta().setName(meta.NAME_CREATOR ).setContent("Andrew Wood, Nicholas Polys: Virginia Tech"))
.addMeta(new meta().setName(meta.NAME_REFERENCE ).setContent("IsoSurfaceSkull.x3d"))
.addMeta(new meta().setName(meta.NAME_REFERENCE ).setContent("README.txt"))
.addMeta(new meta().setName(meta.NAME_REFERENCE ).setContent("Get prerequisite dataset, http://snoid.sv.vt.edu/medical/X3DVolumes/examples/datasets/nrrd/skull.nrrd"))
.addMeta(new meta().setName(meta.NAME_REFERENCE ).setContent("All datasets, http://snoid.sv.vt.edu/medical/X3DVolumes/examples/datasets/datasets.zip"))
.addMeta(new meta().setName(meta.NAME_REFERENCE ).setContent("All datasets, https://savage.nps.edu/Savage/VolumeRendering/datasets/nrrd/datasets.zip"))
.addMeta(new meta().setName(meta.NAME_REFERENCE ).setContent("Run the download target in the Ant build.xml file to install reference nrrd files locally."))
.addMeta(new meta().setName(meta.NAME_REFERENCE ).setContent("build.xml"))
.addMeta(new meta().setName(meta.NAME_IDENTIFIER ).setContent("https://www.web3d.org/x3d/content/examples/Basic/VolumeRendering/IsoSurfaceSkull.x3d"))
.addMeta(new meta().setName(meta.NAME_REFERENCE ).setContent("Volume Data obtained from http://www.volvis.org"))
.addMeta(new meta().setName(meta.NAME_GENERATOR ).setContent("Nrrd conversion utility located at http://teem.sourceforge.net/unrrdu"))
.addMeta(new meta().setName(meta.NAME_GENERATOR ).setContent("X3D-Edit 3.3, https://savage.nps.edu/X3D-Edit"))
.addMeta(new meta().setName(meta.NAME_LICENSE ).setContent("../license.html")))
.setScene(new Scene()
.addChild(new WorldInfo().setTitle("IsoSurfaceSkull.x3d"))
.addChild(new Group()
.addChild(new Viewpoint("VP").setDescription("IsoSurface Skull").setOrientation(-0.675123,0.549845,0.491812,4.56937).setPosition(-0.294435,-0.11334,0.0508642))
.addChild(new Background("BG"))
.addChild(new Transform().setScale(0.117188,0.117188,0.117188)
.addChild(new IsoSurfaceVolumeData().setDimensions(1.28,1.28,1.28).setSurfaceValues(new double[] {.15})
.addRenderStyle(new CartoonVolumeStyle().setColorSteps(32))
.setVoxels(new ImageTexture3D().setUrl(new String[] {"datasets/nrrd/skull.nrrd","http://snoid.sv.vt.edu/medical/X3DVolumes/examples/datasets/nrrd/skull.nrd","https://savage.nps.edu/Savage/VolumeRendering/datasets/nrrd/skull.nrd"}))))));
}
catch (Exception ex)
{
System.err.println ("*** Further hints on X3DJSAIL errors and exceptions at");
System.err.println ("*** https://www.web3d.org/specifications/java/X3DJSAIL.html");
throw (ex);
}
}
// end of initialize() method
/** The initialized model object, created within initialize() method. */
private X3D x3dModel;
/**
* Provide a
* shallow copy
* of the X3D model.
* @see X3D
* @return IsoSurfaceSkull model
*/
public X3D getX3dModel()
{
return x3dModel;
}
/**
* Default main() method provided for test purposes, uses CommandLine to set global ConfigurationProperties for this object.
* @param args array of input parameters, provided as arguments
* @see X3D.handleArguments(args)
* @see X3D.validationReport()
* @see CommandLine
* @see CommandLine.USAGE
* @see ConfigurationProperties
*/
public static void main(String args[])
{
System.out.println("Build this X3D model, showing validation diagnostics...");
X3D thisExampleX3dModel = new IsoSurfaceSkull().getX3dModel();
// System.out.println("X3D model construction complete.");
// next handle command line arguments
boolean hasArguments = (args != null) && (args.length > 0);
boolean validate = true; // default
boolean argumentsLoadNewModel = false;
String fileName = new String();
if (args != null)
{
for (String arg : args)
{
if (arg.toLowerCase().startsWith("-v") || arg.toLowerCase().contains("validate"))
{
validate = true; // making sure
}
if (arg.toLowerCase().endsWith(X3D.FILE_EXTENSION_X3D) ||
arg.toLowerCase().endsWith(X3D.FILE_EXTENSION_CLASSICVRML) ||
arg.toLowerCase().endsWith(X3D.FILE_EXTENSION_X3DB) ||
arg.toLowerCase().endsWith(X3D.FILE_EXTENSION_VRML97) ||
arg.toLowerCase().endsWith(X3D.FILE_EXTENSION_EXI) ||
arg.toLowerCase().endsWith(X3D.FILE_EXTENSION_GZIP) ||
arg.toLowerCase().endsWith(X3D.FILE_EXTENSION_ZIP) ||
arg.toLowerCase().endsWith(X3D.FILE_EXTENSION_HTML) ||
arg.toLowerCase().endsWith(X3D.FILE_EXTENSION_XHTML))
{
argumentsLoadNewModel = true;
fileName = arg;
}
}
}
if (argumentsLoadNewModel)
System.out.println("WARNING: \"Basic.VolumeRendering.IsoSurfaceSkull\" model invocation is attempting to load file \"" + fileName + "\" instead of simply validating itself... file loading ignored.");
else if (hasArguments) // if no arguments provided, this method produces usage warning
thisExampleX3dModel.handleArguments(args);
if (validate)
{
// System.out.println("--- TODO fix duplicated outputs ---"); // omit when duplicated outputs problem is solved/refactored
String validationResults = thisExampleX3dModel.validationReport();
// System.out.println("-----------------------------------"); // omit when duplicated outputs problem is solved/refactored
System.out.print("Basic.VolumeRendering.IsoSurfaceSkull self-validation test confirmation: ");
if (!validationResults.equals("success"))
System.out.println();
System.out.println(validationResults.trim());
// experimental: test X3DJSAIL output files
// VolumeRendering/IsoSurfaceSkull_JavaExport.* file validation is checked when building X3D Example Archives
String filenameX3D = "VolumeRendering/IsoSurfaceSkull_JavaExport.x3d";
String filenameX3DV = "VolumeRendering/IsoSurfaceSkull_JavaExport.x3dv";
String filenameJSON = "VolumeRendering/IsoSurfaceSkull_JavaExport.json";
thisExampleX3dModel.toFileX3D (filenameX3D);
thisExampleX3dModel.toFileClassicVRML(filenameX3DV);
// TODO thisExampleX3dModel.toFileJSON (filenameJSON);
}
}
}