Difference between revisions of "DICOM CD workflow"

From Web3D.org
Jump to: navigation, search
Line 1: Line 1:
 
A description of the workflow to produce the medical image rendered in X3DOM [http://www.kshell.com/pages/MedDICOMDemo20161018/index.xhtml here], from the CD containing results of MRI scans.
 
A description of the workflow to produce the medical image rendered in X3DOM [http://www.kshell.com/pages/MedDICOMDemo20161018/index.xhtml here], from the CD containing results of MRI scans.
  
[http://www.kshell.com/pages/MedDICOMDemo20161018/index.xhtml  Complete Scan]
+
[http://www.kshell.com/pages/MedDICOMDemo20161018/index.xhtml  Complete Image Set]
 
[http://www.kshell.com/pages/MedDICOMDemo20161018/index2.xhtml Truncated Image Set]
 
[http://www.kshell.com/pages/MedDICOMDemo20161018/index2.xhtml Truncated Image Set]
 +
 +
  
  
Line 14: Line 16:
 
*[http://www.osirix-viewer.com/download_form/download_form.php Osirix-Lite] : This free demo version of the [http://www.osirix-viewer.com/ Osirix] software for viewing DICOM image files, for Mac OS. Similar [http://technologyadvice.com/blog/healthcare/5-dicom-viewers/ DICOM viewers] are available for Windows OS
 
*[http://www.osirix-viewer.com/download_form/download_form.php Osirix-Lite] : This free demo version of the [http://www.osirix-viewer.com/ Osirix] software for viewing DICOM image files, for Mac OS. Similar [http://technologyadvice.com/blog/healthcare/5-dicom-viewers/ DICOM viewers] are available for Windows OS
  
 
+
==Scans==
 +
The original data set was flat collection of DICOM files as provided on CD by a hospital. The contents of this folder were imported into the Osirix Lite viewing software. The viewing software organized the file set by patient name (there was only one patient) and into three series of scans. The thumbnail images for one such series is shown:
 
[[File:DWI_NEW_NOGOP_1.jpg | 1080px | center | MRI scan series from DICOM folder generated by Osirix software]]
 
[[File:DWI_NEW_NOGOP_1.jpg | 1080px | center | MRI scan series from DICOM folder generated by Osirix software]]

Revision as of 09:13, 24 October 2016

A description of the workflow to produce the medical image rendered in X3DOM here, from the CD containing results of MRI scans.

Complete Image Set Truncated Image Set



Software

  • Python 2.7 , with additional libraries
    • NumPy - numerical analysis library
    • SciPy - companion to NumPy with additional analysis functions
    • PIL - Python Imaging Library
    • pydicom A python library for reading DICOM files.
  • Osirix-Lite : This free demo version of the Osirix software for viewing DICOM image files, for Mac OS. Similar DICOM viewers are available for Windows OS

Scans

The original data set was flat collection of DICOM files as provided on CD by a hospital. The contents of this folder were imported into the Osirix Lite viewing software. The viewing software organized the file set by patient name (there was only one patient) and into three series of scans. The thumbnail images for one such series is shown:

MRI scan series from DICOM folder generated by Osirix software