<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE X3D PUBLIC "ISO//Web3D//DTD X3D 3.0//EN" "http://www.web3d.org/specifications/x3d-3.0.dtd">
<X3D profile='Immersive' version='3.0' xmlns:xsd='http://www.w3.org/2001/XMLSchema-instance' xsd:noNamespaceSchemaLocation=' http://www.web3d.org/specifications/x3d-3.0.xsd '>
<head>
<meta name='title' content='Alanine.x3d'/>
<meta name='description' content='Autogenerated version of Alanine.x3d scene produced from Alanine.xml Chemical Markup Language (CML) source file.'/>
<meta name='creator' content='Nicholas F. Polys'/>
<meta name='created' content='24 November 2005'/>
<meta name='modified' content='11 February 2012'/>
<meta name='reference' content='Alanine.xml'/>
<meta name='CML version' content='1.0'/>
<meta name='reference' content=' CML sources http://www.xml-cml.org '/>
<meta name='reference' content='JUMBO Chemical Format Conversion Tool'/>
<meta name='reference' content=' http://webbook.nist.gov/chemistry '/>
<meta name='reference' content='Polys.StylesheetTransformationsInteractiveVisualization.Web3d2003Symposium.pdf'/>
<meta name='reference' content='Originally Published in Proceedings of Web3D 2003, ACM Press'/>
<meta name='generator' content='CmlToX3d.xslt'/>
<meta name='identifier' content=' http://www.web3d.org/x3d/content/examples/Basic/ChemicalMarkupLanguage/Alanine.x3d '/>
<meta name='license' content=' ../license.html'/>
</head>
<!--
Index for ProtoDeclare definitions: Carbon, Hydrogen, Nitrogen, Oxygen, Fluorine, Silicon, Phosphorus, Sulphur, Chlorine, Bromine, Iodine, unknown, line, title_text, ano1_text, ano2_text
Index for DEF nodes: alanine_a1, alanine_a2, alanine_a3, alanine_a4, alanine_a5, alanine_a6, alanine_b1, alanine_b2, alanine_b3, alanine_b3_2, alanine_b4, alanine_b5, ato_, ato__mat, atoBr, atoBr_mat, atoC, atoC_mat, atoCl, atoCl_mat, atoF, atoF_mat, atoH, atoH_mat, atoI, atoI_mat, atoN, atoN_mat, atoO, atoO_mat, atoP, atoP_mat, atoS, atoS_mat, atoSi, atoSi_mat, bondo, cmpd_name, cmpd_name1, cmpd_name2, infogroupa
Index for Viewpoint image: Viewpoint_1
-->
<Scene>
<ProtoDeclare name='Carbon'>
<ProtoInterface>
<field name='position' type='SFVec3f' value='0 0 0' accessType='inputOutput'/>
<field name='Mat' type='SFFloat' value='.6' accessType='inputOutput'/>
</ProtoInterface>
<ProtoBody>
<Group>
<Transform DEF='atoC'>
<IS>
<connect nodeField='translation' protoField='position'/>
</IS>
<Shape>
<Appearance>
<Material DEF='atoC_mat' diffuseColor='0 0 0' shininess='.8' specularColor='.29 .3 .29'>
<IS>
<connect nodeField='transparency' protoField='Mat'/>
</IS>
</Material>
</Appearance>
<Sphere radius='.77'/>
</Shape>
<Shape>
<Appearance>
<Material diffuseColor='0.9 0.9 0.9'/>
</Appearance>
<Text string='"C"' solid='false'>
<FontStyle size='.8'/>
</Text>
</Shape>
</Transform>
</Group>
</ProtoBody>
</ProtoDeclare>
<ProtoDeclare name='Hydrogen'>
<ProtoInterface>
<field name='position' type='SFVec3f' value='0 0 0' accessType='inputOutput'/>
<field name='Mat' type='SFFloat' value='.6' accessType='inputOutput'/>
</ProtoInterface>
<ProtoBody>
<Group>
<Transform DEF='atoH'>
<IS>
<connect nodeField='translation' protoField='position'/>
</IS>
<Shape>
<Appearance>
<Material DEF='atoH_mat' ambientIntensity='.0933' diffuseColor='.38 .38 .42' shininess='0.5' specularColor='.53 .53 .53'>
<IS>
<connect nodeField='transparency' protoField='Mat'/>
</IS>
</Material>
</Appearance>
<Sphere radius='.32'/>
</Shape>
<Shape>
<Appearance>
<Material diffuseColor='0.9 0.9 0.9'/>
</Appearance>
<Text string='"H"' solid='false'>
<FontStyle size='.4'/>
</Text>
</Shape>
</Transform>
</Group>
</ProtoBody>
</ProtoDeclare>
<ProtoDeclare name='Nitrogen'>
<ProtoInterface>
<field name='position' type='SFVec3f' value='0 0 0' accessType='inputOutput'/>
<field name='Mat' type='SFFloat' value='.6' accessType='inputOutput'/>
</ProtoInterface>
<ProtoBody>
<Group>
<Transform DEF='atoN'>
<IS>
<connect nodeField='translation' protoField='position'/>
</IS>
<Shape>
<Appearance>
<Material DEF='atoN_mat' diffuseColor='0 0 .72' emissiveColor='0 0 .13' specularColor='.5 .5 .5'>
<IS>
<connect nodeField='transparency' protoField='Mat'/>
</IS>
</Material>
</Appearance>
<Sphere radius='.75'/>
</Shape>
<Shape>
<Appearance>
<Material diffuseColor='0.9 0.9 0.9'/>
</Appearance>
<Text string='"N"' solid='false'>
<FontStyle size='.8'/>
</Text>
</Shape>
</Transform>
</Group>
</ProtoBody>
</ProtoDeclare>
<ProtoDeclare name='Oxygen'>
<ProtoInterface>
<field name='position' type='SFVec3f' value='0 0 0' accessType='inputOutput'/>
<field name='Mat' type='SFFloat' value='.6' accessType='inputOutput'/>
</ProtoInterface>
<ProtoBody>
<Group>
<Transform DEF='atoO'>
<IS>
<connect nodeField='translation' protoField='position'/>
</IS>
<Shape>
<Appearance>
<Material DEF='atoO_mat' ambientIntensity='.487' diffuseColor='.54 .05 .25' shininess='.2' specularColor='.81 .77 .75'>
<IS>
<connect nodeField='transparency' protoField='Mat'/>
</IS>
</Material>
</Appearance>
<Sphere radius='.73'/>
</Shape>
<Shape>
<Appearance>
<Material diffuseColor='0.9 0.9 0.9'/>
</Appearance>
<Text string='"O"' solid='false'>
<FontStyle size='.8'/>
</Text>
</Shape>
</Transform>
</Group>
</ProtoBody>
</ProtoDeclare>
<ProtoDeclare name='Fluorine'>
<ProtoInterface>
<field name='position' type='SFVec3f' value='0 0 0' accessType='inputOutput'/>
<field name='Mat' type='SFFloat' value='.6' accessType='inputOutput'/>
</ProtoInterface>
<ProtoBody>
<Group>
<Transform DEF='atoF'>
<IS>
<connect nodeField='translation' protoField='position'/>
</IS>
<Shape>
<Appearance>
<Material DEF='atoF_mat' diffuseColor='1 .48 .79' emissiveColor='.09 .04 .07'>
<IS>
<connect nodeField='transparency' protoField='Mat'/>
</IS>
</Material>
</Appearance>
<Sphere radius='.72'/>
</Shape>
<Shape>
<Appearance>
<Material diffuseColor='0.9 0.9 0.9'/>
</Appearance>
<Text string='"F"' solid='false'>
<FontStyle size='.8'/>
</Text>
</Shape>
</Transform>
</Group>
</ProtoBody>
</ProtoDeclare>
<ProtoDeclare name='Silicon'>
<ProtoInterface>
<field name='position' type='SFVec3f' value='0 0 0' accessType='inputOutput'/>
<field name='Mat' type='SFFloat' value='.6' accessType='inputOutput'/>
</ProtoInterface>
<ProtoBody>
<Group>
<Transform DEF='atoSi'>
<IS>
<connect nodeField='translation' protoField='position'/>
</IS>
<Shape>
<Appearance>
<Material DEF='atoSi_mat' diffuseColor='.8 .8 .8'>
<IS>
<connect nodeField='transparency' protoField='Mat'/>
</IS>
</Material>
</Appearance>
<Sphere radius='1.18'/>
</Shape>
<Shape>
<Appearance>
<Material diffuseColor='0.9 0.9 0.9'/>
</Appearance>
<Text string='"Si"' solid='false'>
<FontStyle size='.8'/>
</Text>
</Shape>
</Transform>
</Group>
</ProtoBody>
</ProtoDeclare>
<ProtoDeclare name='Phosphorus'>
<ProtoInterface>
<field name='position' type='SFVec3f' value='0 0 0' accessType='inputOutput'/>
<field name='Mat' type='SFFloat' value='.6' accessType='inputOutput'/>
</ProtoInterface>
<ProtoBody>
<Group>
<Transform DEF='atoP'>
<IS>
<connect nodeField='translation' protoField='position'/>
</IS>
<Shape>
<Appearance>
<Material DEF='atoP_mat' ambientIntensity='.11' diffuseColor='.9 .41 0' emissiveColor='.1 .04 0' shininess='0.8' specularColor='.1 .1 .1'>
<IS>
<connect nodeField='transparency' protoField='Mat'/>
</IS>
</Material>
</Appearance>
<Sphere radius='1.1'/>
</Shape>
<Shape>
<Appearance>
<Material diffuseColor='0.9 0.9 0.9'/>
</Appearance>
<Text string='"P"' solid='false'>
<FontStyle size='.8'/>
</Text>
</Shape>
</Transform>
</Group>
</ProtoBody>
</ProtoDeclare>
<ProtoDeclare name='Sulphur'>
<ProtoInterface>
<field name='position' type='SFVec3f' value='0 0 0' accessType='inputOutput'/>
<field name='Mat' type='SFFloat' value='.6' accessType='inputOutput'/>
</ProtoInterface>
<ProtoBody>
<Group>
<Transform DEF='atoS'>
<IS>
<connect nodeField='translation' protoField='position'/>
</IS>
<Shape>
<Appearance>
<Material DEF='atoS_mat' ambientIntensity='.0467' diffuseColor='.25 .39 .25' emissiveColor='.05 .08 .05' shininess='0.6' specularColor='.11 .12 .08'>
<IS>
<connect nodeField='transparency' protoField='Mat'/>
</IS>
</Material>
</Appearance>
<Sphere radius='1.3'/>
</Shape>
<Shape>
<Appearance>
<Material diffuseColor='0.9 0.9 0.9'/>
</Appearance>
<Text string='"S"' solid='false'>
<FontStyle size='.8'/>
</Text>
</Shape>
</Transform>
</Group>
</ProtoBody>
</ProtoDeclare>
<ProtoDeclare name='Chlorine'>
<ProtoInterface>
<field name='position' type='SFVec3f' value='0 0 0' accessType='inputOutput'/>
<field name='Mat' type='SFFloat' value='.6' accessType='inputOutput'/>
</ProtoInterface>
<ProtoBody>
<Group>
<Transform DEF='atoCl'>
<IS>
<connect nodeField='translation' protoField='position'/>
</IS>
<Shape>
<Appearance>
<Material DEF='atoCl_mat' diffuseColor='.28 .7 0' emissiveColor='.06 .15 0' shininess='0.8' specularColor='.5 .5 .5'>
<IS>
<connect nodeField='transparency' protoField='Mat'/>
</IS>
</Material>
</Appearance>
<Sphere/>
</Shape>
<Shape>
<Appearance>
<Material diffuseColor='0.9 0.9 0.9'/>
</Appearance>
<Text string='"Cl"' solid='false'>
<FontStyle size='.8'/>
</Text>
</Shape>
</Transform>
</Group>
</ProtoBody>
</ProtoDeclare>
<ProtoDeclare name='Bromine'>
<ProtoInterface>
<field name='position' type='SFVec3f' value='0 0 0' accessType='inputOutput'/>
<field name='Mat' type='SFFloat' value='.6' accessType='inputOutput'/>
</ProtoInterface>
<ProtoBody>
<Group>
<Transform DEF='atoBr'>
<IS>
<connect nodeField='translation' protoField='position'/>
</IS>
<Shape>
<Appearance>
<Material DEF='atoBr_mat' ambientIntensity='.0833' diffuseColor='.5 .3 .19' emissiveColor='.12 .13 .08' shininess='0.17' specularColor='.08 .08 .05'>
<IS>
<connect nodeField='transparency' protoField='Mat'/>
</IS>
</Material>
</Appearance>
<Sphere radius='1.14'/>
</Shape>
<Shape>
<Appearance>
<Material diffuseColor='0.9 0.9 0.9'/>
</Appearance>
<Text string='"Br"' solid='false'>
<FontStyle size='.8'/>
</Text>
</Shape>
</Transform>
</Group>
</ProtoBody>
</ProtoDeclare>
<ProtoDeclare name='Iodine'>
<ProtoInterface>
<field name='position' type='SFVec3f' value='0 0 0' accessType='inputOutput'/>
<field name='Mat' type='SFFloat' value='.6' accessType='inputOutput'/>
</ProtoInterface>
<ProtoBody>
<Group>
<Transform DEF='atoI'>
<IS>
<connect nodeField='translation' protoField='position'/>
</IS>
<Shape>
<Appearance>
<Material DEF='atoI_mat' diffuseColor='.56 .37 .74' emissiveColor='.15 .1 .2' shininess='.09' specularColor='.12 .12 .12'>
<IS>
<connect nodeField='transparency' protoField='Mat'/>
</IS>
</Material>
</Appearance>
<Sphere radius='1.33'/>
</Shape>
<Shape>
<Appearance>
<Material diffuseColor='0.9 0.9 0.9'/>
</Appearance>
<Text string='"I"' solid='false'>
<FontStyle size='.8'/>
</Text>
</Shape>
</Transform>
</Group>
</ProtoBody>
</ProtoDeclare>
<ProtoDeclare name='unknown'>
<ProtoInterface>
<field name='position' type='SFVec3f' value='0 0 0' accessType='inputOutput'/>
<field name='Mat' type='SFFloat' value='.6' accessType='inputOutput'/>
</ProtoInterface>
<ProtoBody>
<Group>
<Transform DEF='ato_'>
<IS>
<connect nodeField='translation' protoField='position'/>
</IS>
<Shape>
<Appearance>
<Material DEF='ato__mat' diffuseColor='1 1 1' emissiveColor='.15 .1 .2' shininess='.09' specularColor='.12 .12 .12'>
<IS>
<connect nodeField='transparency' protoField='Mat'/>
</IS>
</Material>
</Appearance>
<Sphere/>
</Shape>
<Shape>
<Appearance>
<Material diffuseColor='0.9 0.9 0.9'/>
</Appearance>
<Text string='"?"' solid='false'>
<FontStyle size='.8'/>
</Text>
</Shape>
</Transform>
</Group>
</ProtoBody>
</ProtoDeclare>
<ProtoDeclare name='line'>
<ProtoInterface>
<field name='bond_set' type='MFVec3f' value='-1 0 0 1 0 0' accessType='inputOutput'/>
</ProtoInterface>
<ProtoBody>
<Transform>
<Shape>
<Appearance>
<Material diffuseColor='1 1 1' emissiveColor='1 1 1'/>
</Appearance>
<IndexedLineSet coordIndex='0 1 -1'>
<Coordinate DEF='bondo'>
<IS>
<connect nodeField='point' protoField='bond_set'/>
</IS>
</Coordinate>
</IndexedLineSet>
</Shape>
</Transform>
</ProtoBody>
</ProtoDeclare>
<ProtoDeclare name='title_text'>
<ProtoInterface>
<field name='txt' type='MFString' accessType='inputOutput'/>
</ProtoInterface>
<ProtoBody>
<Transform>
<Group>
<Transform>
<Shape>
<Appearance>
<Material diffuseColor='0.9 0.9 0.9'/>
</Appearance>
<Text DEF='cmpd_name' solid='false'>
<IS>
<connect nodeField='string' protoField='txt'/>
</IS>
<FontStyle/>
</Text>
</Shape>
</Transform>
</Group>
</Transform>
</ProtoBody>
</ProtoDeclare>
<ProtoDeclare name='ano1_text'>
<ProtoInterface>
<field name='txt' type='MFString' accessType='inputOutput'/>
</ProtoInterface>
<ProtoBody>
<Transform>
<Group>
<Transform>
<Shape>
<Appearance>
<Material diffuseColor='0.9 0.9 0.9'/>
</Appearance>
<Text DEF='cmpd_name1' solid='false'>
<IS>
<connect nodeField='string' protoField='txt'/>
</IS>
<FontStyle size='.8'/>
</Text>
</Shape>
</Transform>
</Group>
</Transform>
</ProtoBody>
</ProtoDeclare>
<ProtoDeclare name='ano2_text'>
<ProtoInterface>
<field name='txt' type='MFString' accessType='inputOutput'/>
</ProtoInterface>
<ProtoBody>
<Transform>
<Group>
<Transform>
<Shape>
<Appearance>
<Material diffuseColor='0.9 0.9 0.9'/>
</Appearance>
<Text DEF='cmpd_name2' solid='false'>
<IS>
<connect nodeField='string' protoField='txt'/>
</IS>
<FontStyle size='.6'/>
</Text>
</Shape>
</Transform>
</Group>
</Transform>
</ProtoBody>
</ProtoDeclare>
<Background groundAngle='1.309 1.571' groundColor='0 0.5 0.7 0 0.4 0.7 0.6 0.5 0.7' skyAngle='1.309 1.571' skyColor='0 0.5 0.8 0 0.6 .7 0.6 0.6 0.7'/>
<PointLight ambientIntensity='1' location='0 0 5' radius='30'/>
<NavigationInfo type='"EXAMINE" "FLY" "ANY"' transitionType='"ANIMATE"'/>
<Viewpoint description='Inspect Alanine' position='0 2 20'/>
<!-- Copyright by the U.S. Sec. Commerce on behalf of U.S.A. All rights reserved. -->
<!-- type="3D" <date day="05" month="02" year="2010"/> -->
<Transform DEF='infogroupa' translation='-8 2 -4'>
<Transform translation='0 6 0'>
<ProtoInstance name='title_text'>
<fieldValue name='txt' value='Alanine: C3 H7 N O2'/>
</ProtoInstance>
</Transform>
<Transform translation='0 5 0'>
<ProtoInstance name='ano1_text'>
<fieldValue name='txt' value='molecule weight: 89.09'/>
</ProtoInstance>
</Transform>
<Transform translation='0 4 0'>
<ProtoInstance name='ano1_text'>
<fieldValue name='txt' value='melting point: 264'/>
</ProtoInstance>
</Transform>
<Transform translation='0 3 0'>
<ProtoInstance name='ano1_text'>
<fieldValue name='txt' value='boiling point: 314'/>
</ProtoInstance>
</Transform>
<Transform translation='0 2 0'>
<ProtoInstance name='ano1_text'>
<fieldValue name='txt' value='specific gravity: 1.42'/>
</ProtoInstance>
</Transform>
</Transform>
<Group>
<Transform>
<ProtoInstance name='Carbon' DEF='alanine_a1'>
<fieldValue name='position' value='3.1133 2.7796 1.817'/>
</ProtoInstance>
</Transform>
<Transform>
<ProtoInstance name='Carbon' DEF='alanine_a2'>
<fieldValue name='position' value='2.0036 2.0206 1.1013'/>
</ProtoInstance>
</Transform>
<Transform>
<ProtoInstance name='Carbon' DEF='alanine_a3'>
<fieldValue name='position' value='1.964 0.5868 1.6215'/>
</ProtoInstance>
</Transform>
<Transform>
<ProtoInstance name='Nitrogen' DEF='alanine_a4'>
<fieldValue name='position' value='0.7338 2.7669 1.2777'/>
</ProtoInstance>
</Transform>
<Transform>
<ProtoInstance name='Oxygen' DEF='alanine_a5'>
<fieldValue name='position' value='4.1888 3.0708 1.0506'/>
</ProtoInstance>
</Transform>
<Transform>
<ProtoInstance name='Oxygen' DEF='alanine_a6'>
<fieldValue name='position' value='3.171 3.1403 2.9781'/>
</ProtoInstance>
</Transform>
</Group>
<Group>
<Transform>
<ProtoInstance name='line' DEF='alanine_b1'>
<fieldValue name='bond_set' value='3.1133 2.7796 1.817 2.0036 2.0206 1.1013'/>
</ProtoInstance>
</Transform>
<Transform>
<ProtoInstance name='line' DEF='alanine_b2'>
<fieldValue name='bond_set' value='3.1133 2.7796 1.817 4.1888 3.0708 1.0506'/>
</ProtoInstance>
</Transform>
<Transform>
<ProtoInstance name='line' DEF='alanine_b3'>
<fieldValue name='bond_set' value='3.0933 2.7796 1.817 3.151 3.1403 2.9781'/>
</ProtoInstance>
<ProtoInstance name='line' DEF='alanine_b3_2'>
<fieldValue name='bond_set' value='3.1333 2.7796 1.817 3.191 3.1403 2.9781'/>
</ProtoInstance>
</Transform>
<Transform>
<ProtoInstance name='line' DEF='alanine_b4'>
<fieldValue name='bond_set' value='2.0036 2.0206 1.1013 1.964 0.5868 1.6215'/>
</ProtoInstance>
</Transform>
<Transform>
<ProtoInstance name='line' DEF='alanine_b5'>
<fieldValue name='bond_set' value='2.0036 2.0206 1.1013 0.7338 2.7669 1.2777'/>
</ProtoInstance>
</Transform>
</Group>
</Scene>
</X3D>
<!--
Index for ProtoDeclare definitions: Carbon, Hydrogen, Nitrogen, Oxygen, Fluorine, Silicon, Phosphorus, Sulphur, Chlorine, Bromine, Iodine, unknown, line, title_text, ano1_text, ano2_text
Index for DEF nodes: alanine_a1, alanine_a2, alanine_a3, alanine_a4, alanine_a5, alanine_a6, alanine_b1, alanine_b2, alanine_b3, alanine_b3_2, alanine_b4, alanine_b5, ato_, ato__mat, atoBr, atoBr_mat, atoC, atoC_mat, atoCl, atoCl_mat, atoF, atoF_mat, atoH, atoH_mat, atoI, atoI_mat, atoN, atoN_mat, atoO, atoO_mat, atoP, atoP_mat, atoS, atoS_mat, atoSi, atoSi_mat, bondo, cmpd_name, cmpd_name1, cmpd_name2, infogroupa
Index for Viewpoint image: Viewpoint_1
-->

<!-- Color key: <X3dNode DEF='idName' field='value'/> matches <XmlElement DEF='idName' attribute='value'/>     <Prototype name='ProtoName'> <field name='fieldName'/> </Prototype> -->