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X3D Example Archives: Basic, Chemical Markup Language

[1] _1_4_Dihydronaphthalene.x3d Inspect _1-4-Dihydronaphthalene
Chapter Viewpoint Slideshow

Chemical Markup Language (CML)

Chemical Markup Language (CML) provides support for most chemistry including molecules, compounds, reactions, spectra, crystals and computational chemistry.

These examples show how to visualize Chemical Markup Language (CML) molecular definitions using previously designed X3D model prototypes by using an XSLT stylesheet transformations. This process is described in the paper "Stylesheet Transformations for Interactive Visualization: Towards a Web3D Chemistry Curricula," originally published in Proceedings of Web3D 2003 Symposium, St. Malo France, 9-12 March 2003, ACM Press.

23 X3D Scenes                 69 Viewpoint Snapshots

_1_4_Dihydronaphthalene
1 4 Dihydronaphthalene.x3d    
[1] _1_4_Dihydronaphthalene.x3d Inspect _1-4-Dihydronaphthalene
[2] _1_4_Dihydronaphthalene.x3d title billboard
[3] _1_4_Dihydronaphthalene.x3d (default X3D view from 0 0 10)

_3_Methy_1H_indene
3 Methy 1 H indene.x3d    
[4] _3_Methy_1H_indene.x3d Inspect _3-methyl-1h-indene
[5] _3_Methy_1H_indene.x3d title billboard
[6] _3_Methy_1H_indene.x3d (default X3D view from 0 0 10)

AceticAcid
Acetic Acid.x3d    
[7] AceticAcid.x3d Inspect AceticAcid
[8] AceticAcid.x3d title billboard
[9] AceticAcid.x3d (default X3D view from 0 0 10)

Alanine
Alanine.x3d    
[10] Alanine.x3d Inspect Alanine
[11] Alanine.x3d title billboard
[12] Alanine.x3d (default X3D view from 0 0 10)

ButanedioicAcid
Butanedioic Acid.x3d    
[13] ButanedioicAcid.x3d Inspect ButanedioicAcid
[14] ButanedioicAcid.x3d title billboard
[15] ButanedioicAcid.x3d (default X3D view from 0 0 10)

Caffeine
Caffeine.x3d    
[16] Caffeine.x3d Inspect Caffeine
[17] Caffeine.x3d title billboard
[18] Caffeine.x3d (default X3D view from 0 0 10)

Cholesterol
Cholesterol.x3d    
[19] Cholesterol.x3d Inspect Cholesterol
[20] Cholesterol.x3d title billboard
[21] Cholesterol.x3d (default X3D view from 0 0 10)

Cortisone
Cortisone.x3d    
[22] Cortisone.x3d Inspect Cortisone
[23] Cortisone.x3d title billboard
[24] Cortisone.x3d (default X3D view from 0 0 10)

CyclohexeneOxide
Cyclohexene Oxide.x3d    
[25] CyclohexeneOxide.x3d Inspect CyclohexeneOxide
[26] CyclohexeneOxide.x3d title billboard
[27] CyclohexeneOxide.x3d (default X3D view from 0 0 10)

Cyclopentanamine
Cyclopentanamine.x3d    
[28] Cyclopentanamine.x3d Inspect Cyclopentanamine
[29] Cyclopentanamine.x3d title billboard
[30] Cyclopentanamine.x3d (default X3D view from 0 0 10)

Digitoxigenin
Digitoxigenin.x3d    
[31] Digitoxigenin.x3d Inspect Digitoxigenin
[32] Digitoxigenin.x3d title billboard
[33] Digitoxigenin.x3d (default X3D view from 0 0 10)

DimethylSulfoxide
Dimethyl Sulfoxide.x3d    
[34] DimethylSulfoxide.x3d Inspect DimethylSulfoxide
[35] DimethylSulfoxide.x3d title billboard
[36] DimethylSulfoxide.x3d (default X3D view from 0 0 10)

Ethanol
Ethanol.x3d    
[37] Ethanol.x3d Inspect Ethanol
[38] Ethanol.x3d title billboard
[39] Ethanol.x3d (default X3D view from 0 0 10)

GlycerolDiacetate
Glycerol Diacetate.x3d    
[40] GlycerolDiacetate.x3d Inspect GlycerolDiacetate
[41] GlycerolDiacetate.x3d title billboard
[42] GlycerolDiacetate.x3d (default X3D view from 0 0 10)

Histamine
Histamine.x3d    
[43] Histamine.x3d Inspect Histamine
[44] Histamine.x3d title billboard
[45] Histamine.x3d (default X3D view from 0 0 10)

Oxytocin
Oxytocin.x3d    
[46] Oxytocin.x3d Inspect Oxytocin
[47] Oxytocin.x3d title billboard
[48] Oxytocin.x3d (default X3D view from 0 0 10)

PyruvicAcid
Pyruvic Acid.x3d    
[49] PyruvicAcid.x3d Inspect PyruvicAcid
[50] PyruvicAcid.x3d title billboard
[51] PyruvicAcid.x3d (default X3D view from 0 0 10)

Riboflavin
Riboflavin.x3d    
[52] Riboflavin.x3d Inspect Riboflavin
[53] Riboflavin.x3d title billboard
[54] Riboflavin.x3d (default X3D view from 0 0 10)

SomatoStatin
Somato Statin.x3d    
[55] SomatoStatin.x3d Inspect SomatoStatin
[56] SomatoStatin.x3d title billboard
[57] SomatoStatin.x3d (default X3D view from 0 0 10)

TartaricAcid
Tartaric Acid.x3d    
[58] TartaricAcid.x3d Inspect TartaricAcid
[59] TartaricAcid.x3d title billboard
[60] TartaricAcid.x3d (default X3D view from 0 0 10)

Tetrahydrofuran
Tetrahydrofuran.x3d    
[61] Tetrahydrofuran.x3d Inspect tetrahydrofuran
[62] Tetrahydrofuran.x3d title billboard
[63] Tetrahydrofuran.x3d (default X3D view from 0 0 10)

TransDCE
Trans DCE.x3d    
[64] TransDCE.x3d Inspect TransDCE
[65] TransDCE.x3d title billboard
[66] TransDCE.x3d (default X3D view from 0 0 10)

VitaminK
Vitamin K.x3d    
[67] VitaminK.x3d Inspect VitaminK
[68] VitaminK.x3d title billboard
[69] VitaminK.x3d (default X3D view from 0 0 10)
 

This viewpoint slideshow is online at
http://www.web3d.org/x3d/content/examples/Basic/ChemicalMarkupLanguage/viewpointSlideshow.html

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Viewpoint image version history at
http://sourceforge.net/p/x3d/code/HEAD/tree/www.web3d.org/x3d/content/examples/Basic/ChemicalMarkupLanguage/_viewpoints

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