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X3D Example Archives: Basic, Chemical Markup Language

[1] _1_4_Dihydronaphthalene.x3d - Inspect _1-4-Dihydronaphthalene
Chapter Viewpoint Slideshow

Chemical Markup Language (CML)

Chemical Markup Language (CML) provides support for most chemistry including molecules, compounds, reactions, spectra, crystals and computational chemistry.

These examples show how to visualize Chemical Markup Language (CML) molecular definitions using previously designed X3D model prototypes by using an XSLT stylesheet transformations. This process is described in the paper "Stylesheet Transformations for Interactive Visualization: Towards a Web3D Chemistry Curricula," originally published in Proceedings of Web3D 2003 Symposium, St. Malo France, 9-12 March 2003, ACM Press.

23 X3D Scenes                 69 Viewpoint Snapshots

_1_4_Dihydronaphthalene
1 4 Dihydronaphthalene.x3d    
[1] _1_4_Dihydronaphthalene.x3d - Inspect _1-4-Dihydronaphthalene
[2] _1_4_Dihydronaphthalene.x3d - title billboard
[3] _1_4_Dihydronaphthalene.x3d - (default X3D view from 0 0 10)

_3_Methy_1H_indene
3 Methy 1 H indene.x3d    
[4] _3_Methy_1H_indene.x3d - Inspect _3-methyl-1h-indene
[5] _3_Methy_1H_indene.x3d - title billboard
[6] _3_Methy_1H_indene.x3d - (default X3D view from 0 0 10)

AceticAcid
Acetic Acid.x3d    
[7] AceticAcid.x3d - Inspect AceticAcid
[8] AceticAcid.x3d - title billboard
[9] AceticAcid.x3d - (default X3D view from 0 0 10)

Alanine
Alanine.x3d    
[10] Alanine.x3d - Inspect Alanine
[11] Alanine.x3d - title billboard
[12] Alanine.x3d - (default X3D view from 0 0 10)

ButanedioicAcid
Butanedioic Acid.x3d    
[13] ButanedioicAcid.x3d - Inspect ButanedioicAcid
[14] ButanedioicAcid.x3d - title billboard
[15] ButanedioicAcid.x3d - (default X3D view from 0 0 10)

Caffeine
Caffeine.x3d    
[16] Caffeine.x3d - Inspect Caffeine
[17] Caffeine.x3d - title billboard
[18] Caffeine.x3d - (default X3D view from 0 0 10)

Cholesterol
Cholesterol.x3d    
[19] Cholesterol.x3d - Inspect Cholesterol
[20] Cholesterol.x3d - title billboard
[21] Cholesterol.x3d - (default X3D view from 0 0 10)

Cortisone
Cortisone.x3d    
[22] Cortisone.x3d - Inspect Cortisone
[23] Cortisone.x3d - title billboard
[24] Cortisone.x3d - (default X3D view from 0 0 10)

CyclohexeneOxide
Cyclohexene Oxide.x3d    
[25] CyclohexeneOxide.x3d - Inspect CyclohexeneOxide
[26] CyclohexeneOxide.x3d - title billboard
[27] CyclohexeneOxide.x3d - (default X3D view from 0 0 10)

Cyclopentanamine
Cyclopentanamine.x3d    
[28] Cyclopentanamine.x3d - Inspect Cyclopentanamine
[29] Cyclopentanamine.x3d - title billboard
[30] Cyclopentanamine.x3d - (default X3D view from 0 0 10)

Digitoxigenin
Digitoxigenin.x3d    
[31] Digitoxigenin.x3d - Inspect Digitoxigenin
[32] Digitoxigenin.x3d - title billboard
[33] Digitoxigenin.x3d - (default X3D view from 0 0 10)

DimethylSulfoxide
Dimethyl Sulfoxide.x3d    
[34] DimethylSulfoxide.x3d - Inspect DimethylSulfoxide
[35] DimethylSulfoxide.x3d - title billboard
[36] DimethylSulfoxide.x3d - (default X3D view from 0 0 10)

Ethanol
Ethanol.x3d    
[37] Ethanol.x3d - Inspect Ethanol
[38] Ethanol.x3d - title billboard
[39] Ethanol.x3d - (default X3D view from 0 0 10)

GlycerolDiacetate
Glycerol Diacetate.x3d    
[40] GlycerolDiacetate.x3d - Inspect GlycerolDiacetate
[41] GlycerolDiacetate.x3d - title billboard
[42] GlycerolDiacetate.x3d - (default X3D view from 0 0 10)

Histamine
Histamine.x3d    
[43] Histamine.x3d - Inspect Histamine
[44] Histamine.x3d - title billboard
[45] Histamine.x3d - (default X3D view from 0 0 10)

Oxytocin
Oxytocin.x3d    
[46] Oxytocin.x3d - Inspect Oxytocin
[47] Oxytocin.x3d - title billboard
[48] Oxytocin.x3d - (default X3D view from 0 0 10)

PyruvicAcid
Pyruvic Acid.x3d    
[49] PyruvicAcid.x3d - Inspect PyruvicAcid
[50] PyruvicAcid.x3d - title billboard
[51] PyruvicAcid.x3d - (default X3D view from 0 0 10)

Riboflavin
Riboflavin.x3d    
[52] Riboflavin.x3d - Inspect Riboflavin
[53] Riboflavin.x3d - title billboard
[54] Riboflavin.x3d - (default X3D view from 0 0 10)

SomatoStatin
Somato Statin.x3d    
[55] SomatoStatin.x3d - Inspect SomatoStatin
[56] SomatoStatin.x3d - title billboard
[57] SomatoStatin.x3d - (default X3D view from 0 0 10)

TartaricAcid
Tartaric Acid.x3d    
[58] TartaricAcid.x3d - Inspect TartaricAcid
[59] TartaricAcid.x3d - title billboard
[60] TartaricAcid.x3d - (default X3D view from 0 0 10)

Tetrahydrofuran
Tetrahydrofuran.x3d    
[61] Tetrahydrofuran.x3d - Inspect tetrahydrofuran
[62] Tetrahydrofuran.x3d - title billboard
[63] Tetrahydrofuran.x3d - (default X3D view from 0 0 10)

TransDCE
Trans DCE.x3d    
[64] TransDCE.x3d - Inspect TransDCE
[65] TransDCE.x3d - title billboard
[66] TransDCE.x3d - (default X3D view from 0 0 10)

VitaminK
Vitamin K.x3d    
[67] VitaminK.x3d - Inspect VitaminK
[68] VitaminK.x3d - title billboard
[69] VitaminK.x3d - (default X3D view from 0 0 10)
 

This viewpoint slideshow is online at
http://www.web3d.org/x3d/content/examples/Basic/ChemicalMarkupLanguage/viewpointSlideshow.html

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Viewpoint image version history at
http://sourceforge.net/p/x3d/code/HEAD/tree/www.web3d.org/x3d/content/examples/Basic/ChemicalMarkupLanguage/_viewpoints

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